Manage services

Start services

sudo opstart

Stop services

sudo opstop

Restart services

sudo oprestart

Refresh cache

sudo opclearcaches

Use systemctl (example with ncbo_cron)

 sudo systemctl restart ncbo_cron.service

List of services

virtuoso.service
virtuoso-public.service
mariadb.service
tomcat.service
redis-server-goo_cache.service
redis-server-http_cache.service
redis-server-persistent.service
mgrep.service
mgrep-lem.service
memcached.service
solr.service
ncbo_cron.service
unicorn.service
ui.service
nginx.service


Service

Description

Path

service file

Port(s)

virtuoso

RDF triple store

/opt/ontoportal/virtuoso

/etc/systemd/system/virtuoso

8890 (internal)

virtuoso-public

Public and read only RDF triple store

/opt/ontoportal/virtuoso-public

/etc/systemd/system/virtuoso-public

8891 (public)

mariadb

Relational database


/lib/systemd/system/mariadb.service

3306 (internal)

tomcat

Servlet container (AnnotatorPlus, Biomixer, O'Faire)

/opt/tomcat

/etc/systemd/system/tomcat.service

8005 (internal)

redis-server-persistent

Background task Redis


/etc/systemd/system/redis-server-persistent.service

6379 (internal)

redis-server-goo_cache

Ontology metadata cache


/etc/systemd/system/redis-server-goo_cache.service

6381 (internal)

redis-server-http_cache

HTTP cache


/etc/systemd/system/redis-server-http_cache.service

6380 (internal)

mgrep

Annotation terminology recognizer

/opt/mgrep

/etc/systemd/system/mgrep.service

55555 (internal)

mgrep-lem

mgrep lemetizer

/opt/mgrep

/etc/systemd/system/mgrep-lem.service

55557 (internal)

memcached

Shared in-memory cache

/usr/bin/memcached

/lib/systemd/system/memcached.service

11211 (internal)

solr

Ontology search indexer

/opt/solr

/etc/systemd/system/solr.service

8983 (internal)

ncbo_cron

Message queue and Background jobs

/opt/ontoportal/ncbo_cron

/etc/systemd/system/ncbo_cron.service

/

ontologies_api

OntoPortal API server

/opt/ontoportal/ontologies_api 

/etc/systemd/system/unicorn.service

8080 (internal)

bioportal_web_ui

Web UI server

/opt/ontoportal/bioportal_web_ui 

/etc/systemd/system/ui.service

8082 (internal)

nginx

Web server & reverse proxy

/usr/sbin/nginx

/lib/systemd/system/nginx.service

80, 443 (open)