Annotators infrastructures
At Agroportal/Bioportal we have more than one annotator (unlike NCBO), in all we have three
1- annotator (Annotator proxy (default one)
Source | https://github.com/ontoportal-lirmm/annotators (master branch) |
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Path | |
The purpose | This annotator is a proxy that calls the https://github.com/ncbo/ncbo_annotator http://data.testportal.lirmm.fr/annotator https://github.com/ncbo/ncbo_annotator of the current protal (SIFRbioportal or Agroportal) and do a post processing to the results |
Build path | /usr/share/tomcat/webapps/annotator.war |
Language | Java |
In the ncbo appliance they renamed this one to "annotatorplus" and use the foloowing build : https://github.com/ncbo/virtual_appliance/blob/main/deployment/artifacts/annotatorplus.war
2- ncbo_annotatorplus
Source | https://github.com/ontoportal-lirmm/annotators(ncbo_annotator branch) |
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Path | |
The purpose | This annotator is a proxy that calls the https://github.com/ncbo/ncbo_annotator of NCBO (at https://data.bioontology.org/annotator ) and add post-annotation capabilities to the NCBO BioPortal Annotator |
build path | /usr/share/tomcat/webapps/ncbo_annotatorplus (deployed on bioportal and stageportal only) |
Language | Java |
2- ncbo_annotator
Source | |
|---|---|
Path | http://services.agroportal.lirmm.fr/annotator(master branch) |
The purpose | This annotator is a proxy that calls the https://github.com/ncbo/ncbo_annotatorhttp://data.testportal.lirmm.fr/annotatorhttps://github.com/ncbo/ncbo_annotator of the current protal (SIFRbioportal or Agroportal) and do a post processing to the results |
build path | https://github.com/ontoportal-lirmm/ontologies_api/blob/master/Gemfile#L47 and https://github.com/ontoportal-lirmm/ncbo_cron/blob/master/Gemfile#L27 |
Language | Ruby |